Package: multibridge 1.2.0

multibridge: Evaluating Multinomial Order Restrictions with Bridge Sampling

Evaluate hypotheses concerning the distribution of multinomial proportions using bridge sampling. The bridge sampling routine is able to compute Bayes factors for hypotheses that entail inequality constraints, equality constraints, free parameters, and mixtures of all three. These hypotheses are tested against the encompassing hypothesis, that all parameters vary freely or against the null hypothesis that all category proportions are equal. For more information see Sarafoglou et al. (2020) <doi:10.31234/osf.io/bux7p>.

Authors:Alexandra Sarafoglou [aut, cre], Frederik Aust [aut], Julia M. Haaf [aut], Joris Goosen [aut], Quentin F. Gronau [aut], Maarten Marsman [aut]

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multibridge.pdf |multibridge.html✨
multibridge/json (API)
NEWS

# Install 'multibridge' in R:
install.packages('multibridge', repos = c('https://asarafoglou.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/asarafoglou/multibridge/issues

Uses libs:
  • mpfr4– Multiple precision floating-point computation
  • c++– GNU Standard C++ Library v3
Datasets:
  • journals - Prevalence of Statistical Reporting Errors
  • lifestresses - Memory of Life Stresses
  • peas - Mendelian Laws of Inheritance

On CRAN:

4.32 score 14 scripts 477 downloads 17 exports 23 dependencies

Last updated 2 years agofrom:c4cee8ddee. Checks:OK: 1 NOTE: 8. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 26 2024
R-4.5-win-x86_64NOTEOct 26 2024
R-4.5-linux-x86_64NOTEOct 26 2024
R-4.4-win-x86_64NOTEOct 26 2024
R-4.4-mac-x86_64NOTEOct 26 2024
R-4.4-mac-aarch64NOTEOct 26 2024
R-4.3-win-x86_64NOTEOct 26 2024
R-4.3-mac-x86_64NOTEOct 26 2024
R-4.3-mac-aarch64NOTEOct 26 2024

Exports:bayes_factorbinom_bf_equalitybinom_bf_inequalitybinom_bf_informedbinom_tsamplingbridge_outputgenerate_restriction_listmult_bf_equalitymult_bf_inequalitymult_bf_informedmult_tsamplingrestriction_listsamplestbinom_backtranstbinom_transtdir_backtranstdir_trans

Dependencies:BrobdingnagclicodacrayongluehmslatticelifecyclemagrittrMatrixmvtnormpkgconfigprettyunitsprogresspurrrR6rbibutilsRcppRdpackrlangstringistringrvctrs

Memory of Lifestresses

Alexandra Sarafoglou

Rendered fromMemoryOfLifestresses.Rmdusingknitr::rmarkdownon Oct 26 2024.

Last update: 2021-04-01
Started: 2021-04-01

Mendelian Laws of Inheritance

Alexandra Sarafoglou

Rendered fromMendelianLawsOfInheritance.Rmdusingknitr::rmarkdownon Oct 26 2024.

Last update: 2021-04-01
Started: 2021-04-01

Prevalence of Statistical Reporting Errors

Alexandra Sarafoglou

Rendered fromPrevalenceOfStatisticalReportingErrors.Rmdusingknitr::rmarkdownon Oct 26 2024.

Last update: 2021-04-01
Started: 2021-04-01

Readme and manuals

Help Manual

Help pageTopics
Adjusts Upper Bound For Free Parameters.adjustUpperBoundForFreeParameters
Computes Length Of Remaining Stick.computeLengthOfRemainingStick
S3 method for class 'bayes_factor.bmult'bayes_factor
Extracts information about computed Bayes factors from object of class 'bmult'bayes_factor.bmult
Computes Bayes Factors For Equality Constrained Binomial Parametersbinom_bf_equality
Computes Bayes Factors For Inequality Constrained Independent Binomial Parametersbinom_bf_inequality
Evaluates Informed Hypotheses on Multiple Binomial Parametersbinom_bf_informed
Samples From Truncated Beta Densitiesbinom_tsampling
S3 method for class 'bridge_output.bmult'bridge_output
Extracts bridge sampling output from object of class 'bmult'bridge_output.bmult
Creates Restriction List Based On User Specified Informed Hypothesisgenerate_restriction_list
Prevalence of Statistical Reporting Errorsjournals
Memory of Life Stresseslifestresses
Computes Bayes Factors For Equality Constrained Multinomial Parametersmult_bf_equality
Computes Bayes Factors For Inequality Constrained Multinomial Parametersmult_bf_inequality
Evaluates Informed Hypotheses on Multinomial Parametersmult_bf_informed
Samples From Truncated Dirichlet Densitymult_tsampling
Mendelian Laws of Inheritancepeas
Plot estimatesplot.summary.bmult
print method for class 'bmult'print.bmult
Print method for class 'bmult_bridge'print.bmult_bridge
print method for class 'summary.bmult'print.summary.bmult
print method for class 'summary.bmult_bridge'print.summary.bmult_bridge
S3 method for class 'restriction_list.bmult'restriction_list
Extracts restriction list from an object of class 'bmult'restriction_list.bmult
S3 method for class 'samples.bmult'samples
Extracts prior and posterior samples (if applicable) from an object of class 'bmult'samples.bmult
summary method for class 'bmult'summary.bmult
summary method for class 'bmult_bridge'summary.bmult_bridge
Backtransforms Samples From Real Line To Beta Parameterstbinom_backtrans
Transforms Truncated Beta Samples To Real Linetbinom_trans
Backtransforms Samples From Real Line To Dirichlet Parameterstdir_backtrans
Transforms Truncated Dirichlet Samples To Real Linetdir_trans